Install Fsl Windows5/25/2023 ![]() In Powershell this can be done with the command $env:FSLDIR = "\\wsl$\usr\local\fsl" to set it for a single session or ::SetEnvironmentVariable("FSLDIR", "\wsl$usrlocalfsl", ::User) to set it permanently. This should be set to \\wsl$\usr\local\fsl assuming the default install directory for FSL on the WSL guest. This can be achieved as follows:Įnable WSL and install FSL into WSL as described in the FSL install instructions.Īdd an FSLDIR enviroment variable on the host Windows machine. To install the full FSL package in WSL, follow the instructions online Option B: Native windows FSL-MRS FSL on WSL Īlternatively, as of V1.1.13 of FSL-MRS the python-only FSL-MRS package can be run in native Windows alongside a WSL FSL installation. This offers an easy way of running a linux environment on a Windows machine. The first option is to install (as above) FSL-MRS and the complete FSL package using Windows Subsystem for Linux (or WSL2). ![]() However there are three routes for using FSL-MRS on Windows.
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